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About

About自己紹介

I build deep-learning systems for signal processing at scale — pulling robust structure out of noisy, high-volume data, and shipping it so it holds up in production.

I build systems for the hard cases — faint signals, large data, and decisions where being wrong is expensive.

That’s how I see the research engineer’s job: turn a promising model into something that runs reliably outside the notebook. My background is unusually wide for it — a PhD in computational neuroscience from King’s College London (deep learning and explainable AI for brain connectivity), on top of eight-plus years in industry spanning Linux-kernel and embedded systems, ML platforms, and a co-founded health-tech startup.

Today I’m a Research Software Engineer at the University of Glasgow, enhancing a clinically deployed ECG program that interprets 20M+ recordings a year — building deep-learning models for arrhythmia detection, noise classification, and signal-quality, and bringing modern ML rigour to a fifty-year-old, safety-critical codebase.

The methods I reach for — detection in noise, time-series modelling, denoising, anomaly detection — are the family astronomy uses to pull faint sources and transients out of overwhelming backgrounds. That cross-pollination, toward larger data and fainter signals, is where I’m heading next.

01Toolbox

Toolbox道具

The languages, frameworks, and systems I reach for.

Languages

PythonJuliaRustC / C++R

ML / DL

PyTorchTensorFlowscikit-learnGraph Neural NetworksLLMs

Signal & data

Time-seriesSignal processingNumPy / SciPyPandasSpectral methods

Systems & scale

LinuxDockerHPC clustersGPU computingCI/CDGit

Domains

Clinical ECGNeuroimaging (fMRI / MRI)GenomicsMedical imaging
02Experience

Experience経歴

Sixteen years across academia and industry — research, engineering, and shipping.

Apr 2025 — Present
academic

Research Software Engineer

University of Glasgow · Glasgow, UK

  • Enhancing the Glasgow ECG analysis program — a clinically deployed algorithm used to interpret 20M+ electrocardiograms a year — with deep-learning models for arrhythmia detection, noise classification, and signal-quality assessment.
  • Bringing modern ML practice (rigorous evaluation, testing, reproducibility) to a fifty-year-old, safety-critical codebase and hardening its pipelines for dependable clinical deployment.
Deep LearningSignal ProcessingTime-SeriesClinical MLPython
Jan 2023 — Nov 2025
industry

Co-founder & CTO

Tycho MedLink · London, UK

  • Co-founded a digital-therapeutics startup and owned all technology for a VR treatment for Seasonal Affective Disorder, from prototype to clinical pilot.
  • Raised £100k across two UKRI rounds (UCL and Cambridge alumni accelerators); ran early trials with UCL Hospitals that demonstrated efficacy.
  • Built the VR product in Unity for Meta hardware with instrumented user metrics.
Digital TherapeuticsVR / XRUnityClinical TrialsLeadership
Jan 2020 — Oct 2024
academic

PhD Researcher, Machine Learning & Neuroimaging

King's College London · London, UK

  • Developed deep-learning methods — graph neural networks with explainable-AI attribution (SmoothGrad, Grad-CAM) — to predict neurodevelopmental outcomes from neonatal brain connectivity.
  • Worked in the CoDe Neuro lab alongside clinicians at the Centre for the Developing Brain; results published and presented at OHBM.
Deep LearningGraph Neural NetworksExplainable AIfMRI
Oct 2020 — Sep 2021
industry

Senior Research Engineer

Prepaire · Dubai, UAE (Remote)

  • Led development of AI models, including custom LLMs, to automate genomic data-analysis pipelines — cutting processing time by ~40%.
  • Shipped models into a high-performance production environment with scalability as a first-class concern.
LLMsGenomicsPyTorchProduction ML
May 2022 — Jul 2022
teaching

Teaching Assistant, Deep Learning

Neuromatch · Remote

  • Taught deep learning (PyTorch, neuroimaging tooling) to an international cohort; ran daily labs and project work.
PyTorchTeachingNeuroimaging
Jul 2022 — Sep 2022
academic

Research Software Engineer

Google Summer of Code · London, UK

  • Built an infant eye-tracking API prototype, mentored by McGill University’s ophthalmology group.
PythonPyTorchMedical DevicesEye Tracking
Nov 2019 — Jan 2023
industry

Technical Editor, Computer Vision

RSIP Vision · Remote

  • Reviewed and distilled state-of-the-art computer-vision and medical-imaging research for a specialist readership (Computer Vision News).
Computer VisionMedical ImagingTechnical Writing
Jan 2019 — Mar 2020
industry

Senior Machine Learning Engineer

Saddington Baynes · London, UK

  • Built AI image-processing automation (TensorFlow) that cut manual work ~50%, with GPU-accelerated Docker and optimised CI/CD for model deployment.
TensorFlowGPU ComputingDockerCI/CD
Nov 2018 — Jan 2019
industry

Software Engineer, Linux Kernel

Microsoft · UK

  • Optimised cloud hypervisor systems at the kernel level (C) for performance and stability; contributed to virtualization R&D.
Linux KernelCVirtualizationSystems
Dec 2016 — Nov 2018
industry

Systems Software Engineer

Kano Computing · London, UK

  • Built and maintained a Linux-based OS (system services, Qt/C++ and GTK); cut image build time from 4 hours to 30 minutes and added CI/CD.
LinuxC++QtDockerCI/CD
Mar 2014 — Jan 2016
academic

Research Software Engineer, Serious Games

University of Athens · Athens, Greece

  • Built an accessible “serious game” for children with mild disabilities (Epinoisi R&D) in PyGame/WebGL with a C++ game AI.
Game DevelopmentC++AccessibilityResearch
Jul 2009 — Dec 2013
industry

Embedded Systems Engineer

INTRACOM Defense Electronics · Athens, Greece

  • Embedded R&D (FPGA, microcontrollers) for a military comms system under NATO clearance; built an automated test framework validated to NATO/MIL-STD.
EmbeddedFPGACSignal Hardware
03Publications

Publications論文

Peer-reviewed papers, conference work, and abstracts.

2025

μ-Opioid Modulation of Sensorimotor Functional Connectivity in Autism: Insights from a Pharmacological Neuroimaging Investigation using Tianeptine

Dimitrov, M., Wong, N.M.L., Leaman, S., França, L.G.S., Valasakis, I., He, J., Lythgoe, D.J., Findon, J.L., Wichers, R.H., Stoencheva, V., Robertson, D.M., Blainey, S., Ivin, G., Holiga, Š., Tricklebank, M.D., Batalle, D., Murphy, D.G.M., McAlonan, G.M., Daly, E.

Biological Psychiatry Global Open Science

journalfMRIPharmacologyConnectivity
doi: 10.1016/j.bpsgos.2025.100663
2024

Explainable Deep Learning for Subtyping: A SmoothGrad Approach

Valasakis, I., Batalle, D., Deprez, M.

OHBM 2024

abstractXAISmoothGradSubtyping
2023

Predicting Neurodevelopmental Phenotypes from Neonatal Brain Connectivity using Graph Neural Networks

Valasakis, I., Batalle, D., Deprez, M., McAlonan, G.

OHBM 2023

abstractGraph Neural NetworksNeonatalBrain Connectivity
2021

Deep learning-based reconstruction for 3D coronary MR angiography with a 3D variational neural network (3D-VNN)

Qi, H., Hammernik, K., Lima da Cruz, G., Valasakis, I., Rueckert, D., Prieto, C., Botnar, R.

ISMRM 2021

conferenceDeep LearningMRIReconstruction3D-VNN
2019

Development of a Processing Toolset for Ion Mobility Mass Spectrometry

Valasakis, I.

MSc Thesis — Birkbeck, University of London

thesisSignal ProcessingMass SpectrometryData Processing
04Contact

Contact連絡

Open to interesting problems in signal, scale, and learning. The fastest way to reach me is email.

Open to

  • Research & engineering roles in signal / ML at scale
  • Collaborations on time-series and detection problems
  • Speaking, peer review, and technical writing
Field